STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A484CC98Uncharacterized protein; Belongs to the DEAD box helicase family. (580 aa)    
Predicted Functional Partners:
A0A484D7W3
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.775
A0A484CZ42
Uncharacterized protein.
    
 0.765
A0A484CVU3
Uncharacterized protein.
  
 0.762
A0A484D1Q8
CPSF_A domain-containing protein.
   
 0.758
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.746
A0A484CZZ4
Sm domain-containing protein.
    
 0.736
A0A484CD03
SAP domain-containing protein.
    
 0.716
A0A484DLA1
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.716
A0A484C3N8
Uncharacterized protein.
    
 0.715
A0A484D5N2
mRNA_decap_C domain-containing protein.
    
 0.715
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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