Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484CC98Uncharacterized protein; Belongs to the DEAD box helicase family. (580 aa)    
Predicted Functional Partners:
A0A484DFU2
Uncharacterized protein.
      
 0.868
A0A484CGD2
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
 0.855
A0A484DE14
Fork-head domain-containing protein.
    
  0.764
A0A484BZG0
TRUD domain-containing protein.
   
 
 0.732
A0A484D3Q0
Uncharacterized protein.
   
  
 0.706
A0A484CWL2
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.
   
 
 0.704
A0A484DMT2
Uncharacterized protein; Belongs to the potassium channel family.
    
 
 0.702
A0A484D8L7
Protein kinase domain-containing protein.
     
 0.694
A0A484CVU3
Uncharacterized protein.
   
 0.672
A0A484CC56
HTH La-type RNA-binding domain-containing protein.
    
 
 0.671
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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