Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484CCB1Sorting nexin; Involved in several stages of intracellular trafficking. (399 aa)    
Predicted Functional Partners:
A0A484DF81
PX domain-containing protein.
   
 0.986
A0A484C5K9
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.934
A0A484D3L8
PX domain-containing protein.
   
 0.926
A0A484DNJ3
PX domain-containing protein.
   
 0.926
A0A484C4G2
Sorting nexin; Involved in several stages of intracellular trafficking.
  
  
 
0.901
A0A484DIG9
PX domain-containing protein.
     
 
0.900
A0A484BZX8
PX domain-containing protein.
   
 0.885
A0A484CVV8
PX domain-containing protein.
   
 0.885
A0A484DRQ9
Uncharacterized protein.
   
 
 0.874
A0A484CI80
PX domain-containing protein.
   
 0.851
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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