Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484CCR4USP domain-containing protein. (772 aa)    
Predicted Functional Partners:
A0A484CCQ2
Ubiquitin-like domain-containing protein.
    
  0.632
A0A484D1R8
Ubiquitin-like domain-containing protein.
    
 
 0.575
A0A484CE07
Uncharacterized protein.
    
 
 0.569
A0A484DPD5
Proteasome subunit beta.
    
   0.558
A0A484CCS2
Uncharacterized protein.
 
     0.517
A0A484CME9
Uncharacterized protein.
    
   0.515
A0A484CMI6
Uncharacterized protein.
   
 
 0.480
A0A484CCF3
Uncharacterized protein.
     
  0.457
A0A484D458
Uncharacterized protein.
     
  0.457
A0A484DPY2
Protein kinase domain-containing protein.
    
   0.441
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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