A0A484CD55 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CD55

WD_REPEATS_REGION domain-containing protein. (583 aa)

Predicted Functional Partners:

A0A484D8Q0

0.981

A0A484CM24

0.979

A0A484CT73

0.979

A0A484CX12

0.979

A0A484D4H3

0.979

A0A484D4R3

0.979

A0A484D693

0.979

A0A484DAK1

0.979

A0A484D2J9

0.970

A0A484DHJ0

0.966

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484CD55	A0A484CM24	WD_REPEATS_REGION domain-containing protein.	Transcription initiation factor TFIID subunit.	0.979
A0A484CD55	A0A484CT73	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.979
A0A484CD55	A0A484CX12	WD_REPEATS_REGION domain-containing protein.	TAFII55_N domain-containing protein.	0.979
A0A484CD55	A0A484D2J9	WD_REPEATS_REGION domain-containing protein.	PHD-type domain-containing protein.	0.970
A0A484CD55	A0A484D4H3	WD_REPEATS_REGION domain-containing protein.	BTP domain-containing protein.	0.979
A0A484CD55	A0A484D4R3	WD_REPEATS_REGION domain-containing protein.	TAFII28 domain-containing protein.	0.979
A0A484CD55	A0A484D693	WD_REPEATS_REGION domain-containing protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.979
A0A484CD55	A0A484D8Q0	WD_REPEATS_REGION domain-containing protein.	TFIID_20kDa domain-containing protein.	0.981
A0A484CD55	A0A484DAK1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.979
A0A484CD55	A0A484DHJ0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.966
A0A484CM24	A0A484CD55	Transcription initiation factor TFIID subunit.	WD_REPEATS_REGION domain-containing protein.	0.979
A0A484CM24	A0A484CT73	Transcription initiation factor TFIID subunit.	Uncharacterized protein.	0.999
A0A484CM24	A0A484CX12	Transcription initiation factor TFIID subunit.	TAFII55_N domain-containing protein.	0.999
A0A484CM24	A0A484D2J9	Transcription initiation factor TFIID subunit.	PHD-type domain-containing protein.	0.999
A0A484CM24	A0A484D4H3	Transcription initiation factor TFIID subunit.	BTP domain-containing protein.	0.996
A0A484CM24	A0A484D4R3	Transcription initiation factor TFIID subunit.	TAFII28 domain-containing protein.	0.999
A0A484CM24	A0A484D693	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
A0A484CM24	A0A484D8Q0	Transcription initiation factor TFIID subunit.	TFIID_20kDa domain-containing protein.	0.999
A0A484CM24	A0A484DAK1	Transcription initiation factor TFIID subunit.	Uncharacterized protein.	0.999
A0A484CT73	A0A484CD55	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.979