Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
A0A484CD55WD_REPEATS_REGION domain-containing protein. (583 aa)    
Predicted Functional Partners:
A0A484D8Q0
TFIID_20kDa domain-containing protein.
   
 0.968
A0A484CM24
Transcription initiation factor TFIID subunit.
    
 0.963
A0A484CT73
Uncharacterized protein.
    
 0.963
A0A484CX12
TAFII55_N domain-containing protein.
    
 0.963
A0A484D4H3
BTP domain-containing protein.
    
 0.963
A0A484D4R3
TAFII28 domain-containing protein.
    
 0.963
A0A484D693
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.963
A0A484DAK1
Uncharacterized protein.
    
 0.963
A0A484DPX6
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
 0.959
A0A484D2J9
PHD-type domain-containing protein.
    
 0.957
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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