A0A484CDI0 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CDI0

Uncharacterized protein. (380 aa)

Predicted Functional Partners:

A0A484DPQ0

0.685

A0A484DET8

0.660

A0A484CP74

0.658

A0A484DJ55

0.658

A0A484DCP3

0.651

A0A484CCA0

0.648

A0A484DPS6

0.648

A0A484C9X8

0.636

A0A484CGF5

0.632

A0A484D1N8

0.630

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C9X8	A0A484CDI0	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A484CCA0	A0A484CDI0	Purple acid phosphatase.	Uncharacterized protein.	0.648
A0A484CCA0	A0A484DPS6	Purple acid phosphatase.	Tartrate-resistant acid phosphatase type 5.	0.905
A0A484CDI0	A0A484C9X8	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A484CDI0	A0A484CCA0	Uncharacterized protein.	Purple acid phosphatase.	0.648
A0A484CDI0	A0A484CGF5	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.632
A0A484CDI0	A0A484CP74	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.658
A0A484CDI0	A0A484D1N8	Uncharacterized protein.	Phospholipase A2.	0.630
A0A484CDI0	A0A484DCP3	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A484CDI0	A0A484DET8	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.660
A0A484CDI0	A0A484DJ55	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.658
A0A484CDI0	A0A484DPQ0	Uncharacterized protein.	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	0.685
A0A484CDI0	A0A484DPS6	Uncharacterized protein.	Tartrate-resistant acid phosphatase type 5.	0.648
A0A484CGF5	A0A484CDI0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.632
A0A484CGF5	A0A484DCP3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.623
A0A484CP74	A0A484CDI0	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.658
A0A484CP74	A0A484D1N8	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Phospholipase A2.	0.626
A0A484CP74	A0A484DCP3	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.942
A0A484CP74	A0A484DPQ0	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...]	0.990
A0A484D1N8	A0A484CDI0	Phospholipase A2.	Uncharacterized protein.	0.630