A0A484CDL1 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CDL1

Uncharacterized protein. (218 aa)

Predicted Functional Partners:

A0A484CRH9

0.740

A0A484C3W5

0.681

A0A484CLT5

0.636

A0A484CQX9

0.631

A0A484BZ21

0.630

A0A484C317

0.616

A0A484CFR5

0.615

A0A484DI73

0.615

A0A484CBC5

0.599

A0A484CRP7

0.599

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484BZ21	A0A484C3W5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.625
A0A484BZ21	A0A484CBC5	WD_REPEATS_REGION domain-containing protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.881
A0A484BZ21	A0A484CDL1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.630
A0A484BZ21	A0A484CRP7	WD_REPEATS_REGION domain-containing protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.625
A0A484C317	A0A484CDL1	Protein BCCIP homolog; Belongs to the BCP1 family.	Uncharacterized protein.	0.616
A0A484C3W5	A0A484BZ21	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.625
A0A484C3W5	A0A484CBC5	Uncharacterized protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.522
A0A484C3W5	A0A484CDL1	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A484C3W5	A0A484CRP7	Uncharacterized protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.522
A0A484C3W5	A0A484DI73	Uncharacterized protein.	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase.	0.436
A0A484CBC5	A0A484BZ21	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	WD_REPEATS_REGION domain-containing protein.	0.881
A0A484CBC5	A0A484C3W5	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Uncharacterized protein.	0.522
A0A484CBC5	A0A484CDL1	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Uncharacterized protein.	0.599
A0A484CBC5	A0A484CRP7	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.655
A0A484CBC5	A0A484DI73	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase.	0.701
A0A484CDL1	A0A484BZ21	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.630
A0A484CDL1	A0A484C317	Uncharacterized protein.	Protein BCCIP homolog; Belongs to the BCP1 family.	0.616
A0A484CDL1	A0A484C3W5	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A484CDL1	A0A484CBC5	Uncharacterized protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.599
A0A484CDL1	A0A484CFR5	Uncharacterized protein.	Uncharacterized protein.	0.615