A0A484CDP2 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CDP2

Uncharacterized protein. (368 aa)

Predicted Functional Partners:

A0A484D661

0.946

A0A484C6K6

0.875

A0A484DHZ3

0.825

A0A484CWE4

0.823

A0A484C474

0.591

A0A484CDR3

0.591

A0A484DNK3

0.585

A0A484DNR4

0.585

A0A484CMZ2

0.581

A0A484CSN7

0.581

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C474	A0A484CDP2	Uncharacterized protein.	Uncharacterized protein.	0.591
A0A484C6K6	A0A484CDP2	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.875
A0A484C6K6	A0A484D661	AB hydrolase-1 domain-containing protein.	UBR-type domain-containing protein.	0.866
A0A484CDP2	A0A484C474	Uncharacterized protein.	Uncharacterized protein.	0.591
A0A484CDP2	A0A484C6K6	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.875
A0A484CDP2	A0A484CDR3	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.591
A0A484CDP2	A0A484CMZ2	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.581
A0A484CDP2	A0A484CSN7	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.581
A0A484CDP2	A0A484CWE4	Uncharacterized protein.	NIPSNAP domain-containing protein.	0.823
A0A484CDP2	A0A484D661	Uncharacterized protein.	UBR-type domain-containing protein.	0.946
A0A484CDP2	A0A484DHZ3	Uncharacterized protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.825
A0A484CDP2	A0A484DNK3	Uncharacterized protein.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.585
A0A484CDP2	A0A484DNR4	Uncharacterized protein.	Uncharacterized protein; Belongs to the pirin family.	0.585
A0A484CDR3	A0A484CDP2	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.591
A0A484CMZ2	A0A484CDP2	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.581
A0A484CMZ2	A0A484D661	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBR-type domain-containing protein.	0.787
A0A484CSN7	A0A484CDP2	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.581
A0A484CSN7	A0A484D661	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBR-type domain-containing protein.	0.787
A0A484CWE4	A0A484CDP2	NIPSNAP domain-containing protein.	Uncharacterized protein.	0.823
A0A484CWE4	A0A484D661	NIPSNAP domain-containing protein.	UBR-type domain-containing protein.	0.860