A0A484CDQ6 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A484CDQ6

Uncharacterized protein. (222 aa)

Predicted Functional Partners:

A0A484C101

0.922

A0A484CDJ5

0.893

A0A484D987

0.862

A0A484CJ72

0.693

A0A484DH83

0.659

A0A484DDE7

0.639

A0A484D955

0.635

A0A484CQ08

0.629

A0A484CS02

0.627

A0A484C361

0.622

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C101	A0A484CDQ6	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Uncharacterized protein.	0.922
A0A484C101	A0A484D955	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.628
A0A484C101	A0A484DH83	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.699
A0A484C361	A0A484CDQ6	Uncharacterized protein.	Uncharacterized protein.	0.622
A0A484C361	A0A484CQ08	Uncharacterized protein.	Uncharacterized protein.	0.662
A0A484CDJ5	A0A484CDQ6	OBG-type G domain-containing protein.	Uncharacterized protein.	0.893
A0A484CDJ5	A0A484CS02	OBG-type G domain-containing protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.795
A0A484CDJ5	A0A484DH83	OBG-type G domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.825
A0A484CDQ6	A0A484C101	Uncharacterized protein.	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.922
A0A484CDQ6	A0A484C361	Uncharacterized protein.	Uncharacterized protein.	0.622
A0A484CDQ6	A0A484CDJ5	Uncharacterized protein.	OBG-type G domain-containing protein.	0.893
A0A484CDQ6	A0A484CJ72	Uncharacterized protein.	BTB domain-containing protein.	0.693
A0A484CDQ6	A0A484CQ08	Uncharacterized protein.	Uncharacterized protein.	0.629
A0A484CDQ6	A0A484CS02	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.627
A0A484CDQ6	A0A484D955	Uncharacterized protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.635
A0A484CDQ6	A0A484D987	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A484CDQ6	A0A484DDE7	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.639
A0A484CDQ6	A0A484DH83	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.659
A0A484CJ72	A0A484CDQ6	BTB domain-containing protein.	Uncharacterized protein.	0.693
A0A484CJ72	A0A484CS02	BTB domain-containing protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.632