Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A484CDZ2Paired domain-containing protein. (460 aa)    
Predicted Functional Partners:
A0A484CBT8
Homeobox domain-containing protein.
    
 0.792
A0A484BYU6
Runt-related transcription factor.
    
 0.683
A0A484DIB7
Uncharacterized protein.
   
 
 0.661
A0A484C3V6
Runt-related transcription factor.
    
 0.657
A0A484C8B3
Runt-related transcription factor.
    
 0.657
A0A484CTH9
Uncharacterized protein.
    
 0.656
A0A484D8D2
Ig-like domain-containing protein.
   
 
 0.624
A0A484CET4
Uncharacterized protein.
   
 0.613
A0A484DGZ6
Uncharacterized protein.
   
 0.611
A0A484DNZ3
Uncharacterized protein.
    
 0.599
Your Current Organism:
Perca flavescens
NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch
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