A0A484DCF4 protein (Perca flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A484DCF4

Uncharacterized protein. (277 aa)

Predicted Functional Partners:

A0A484DN89

0.611

A0A484CKI8

0.570

A0A484C9B2

0.566

A0A484DIF4

0.566

A0A484CIP9

0.561

A0A484D1G4

0.557

A0A484C9X0

0.520

A0A484CBN0

0.500

A0A484CTN5

0.492

A0A484C9U2

0.477

Your Current Organism:

Perca flavescens

NCBI taxonomy Id: 8167
Other names: Morone flavescens, P. flavescens, yellow perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A484C9B2	A0A484CBN0	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A484C9B2	A0A484CKI8	Uncharacterized protein.	Uncharacterized protein.	0.502
A0A484C9B2	A0A484D1G4	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A484C9B2	A0A484DCF4	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A484C9B2	A0A484DN89	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A484C9U2	A0A484CBN0	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A484C9U2	A0A484CIP9	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A484C9U2	A0A484CKI8	Uncharacterized protein.	Uncharacterized protein.	0.623
A0A484C9U2	A0A484D1G4	Uncharacterized protein.	Uncharacterized protein.	0.464
A0A484C9U2	A0A484DCF4	Uncharacterized protein.	Uncharacterized protein.	0.477
A0A484C9U2	A0A484DN89	Uncharacterized protein.	Uncharacterized protein.	0.437
A0A484C9X0	A0A484DCF4	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Uncharacterized protein.	0.520
A0A484CBN0	A0A484C9B2	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A484CBN0	A0A484C9U2	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A484CBN0	A0A484CIP9	Uncharacterized protein.	Uncharacterized protein.	0.558
A0A484CBN0	A0A484CKI8	Uncharacterized protein.	Uncharacterized protein.	0.526
A0A484CBN0	A0A484D1G4	Uncharacterized protein.	Uncharacterized protein.	0.530
A0A484CBN0	A0A484DCF4	Uncharacterized protein.	Uncharacterized protein.	0.500
A0A484CBN0	A0A484DIF4	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A484CBN0	A0A484DN89	Uncharacterized protein.	Uncharacterized protein.	0.503