STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rprd1aRegulation of nuclear pre-mRNA domain containing 1A. (294 aa)    
Predicted Functional Partners:
polr2a
RNA polymerase II subunit A.
    
 0.969
polr2b
RNA polymerase II subunit B.
   
 0.961
xrn2
5'-3' exoribonuclease 2.
    
 
 0.923
rpap2
RNA polymerase II associated protein 2.
   
 0.923
DXO
Decapping exoribonuclease.
    
 
 0.923
polr2c
RNA polymerase II subunit C.
    
 0.890
polr2g
RNA polymerase II subunit G.
    
 0.885
polr2i
RNA polymerase II subunit I.
    
 0.882
polr2d
RNA polymerase II subunit D.
    
  0.879
polr2f
RNA polymerase II subunit F.
    
 0.849
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.