STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115584437Tyrosine-protein kinase STYK1-like. (384 aa)    
Predicted Functional Partners:
ENSSAUP00010046399
Colony stimulating factor 1b (macrophage).
   
 0.693
kitlg
KIT ligand.
    
 0.686
il34
Interleukin 34.
    
 0.686
ENSSAUP00010014681
Placental growth factor b.
    
 0.657
ENSSAUP00010025304
SHC (Src homology 2 domain containing) transforming protein 2.
   
 0.635
rpl13a
Ribosomal protein L13a.
    
 0.617
LOC115591563
Ell-associated factor Eaf-like.
    
 0.610
LOC115576367
Trichohyalin-like.
    
 0.610
met
MET proto-oncogene, receptor tyrosine kinase.
    
 
0.609
mst1r
Macrophage stimulating 1 receptor.
    
 
0.609
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.