STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sort1Sortilin 1. (823 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
     
 0.980
ENSSAUP00010014577
Neurotensin.
    
 
 0.946
ENSSAUP00010028107
Si:dkey-159a18.1.
  
  
 
0.854
LOC115583690
Sortilin-like.
  
  
 
0.847
bdnf
Brain derived neurotrophic factor.
    
 
 0.818
LOC115571751
Tumor necrosis factor receptor superfamily member 16-like.
    
  0.811
psmb1
Proteasome 20S subunit beta 1.
    
   0.789
psma1
Proteasome 20S subunit alpha 1.
    
   0.789
psma8
Proteasome 20S subunit alpha 8.
    
   0.789
ENSSAUP00010018703
annotation not available
    
0.741
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.