STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115583613Protein LSM14 homolog B-like. (369 aa)    
Predicted Functional Partners:
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 
 0.894
LOC115566657
Probable ATP-dependent RNA helicase ddx6.
   
 
 0.863
LOC115576278
Probable ATP-dependent RNA helicase ddx6.
   
 
 0.863
ENSSAUP00010069342
annotation not available
   
 
 0.863
ENSSAUP00010029726
Decapping mRNA 2.
    
 
 0.833
dcp1a
Decapping mRNA 1A.
    
 
 0.786
LOC115595325
mRNA-decapping enzyme 1B-like.
    
 
 0.786
LOC115587354
Enhancer of mRNA-decapping protein 3-like.
    
 
 0.779
LOC115580748
Enhancer of mRNA-decapping protein 3-like.
    
 
 0.779
yjefn3
YjeF N-terminal domain containing 3.
    
 
 0.650
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.