STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d1TBC1 domain family member 1. (1393 aa)    
Predicted Functional Partners:
rab2a
RAB2A, member RAS oncogene family.
    
 0.860
LOC115581384
Ras-related protein Rab-14-like.
    
 0.851
rab14
RAB14, member RAS oncogene family.
    
 0.851
ENSSAUP00010018613
Protein kinase, AMP-activated, alpha 2 catalytic subunit.
     
 0.774
prkaa1
Protein kinase AMP-activated catalytic subunit alpha 1.
     
 0.774
ENSSAUP00010004931
annotation not available
    
 0.703
LOC115591110
Ras-related protein Rab-11B-like.
    
 0.703
LOC115572549
Ras-related protein Rab-11B.
    
 0.703
LOC115568111
Ras-related protein Rab-11A-like.
    
 0.703
ENSSAUP00010045762
RAB11a, member RAS oncogene family.
    
 0.703
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.