STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115584722Helicase ARIP4-like. (1491 aa)    
Predicted Functional Partners:
fancm
FA complementation group M.
   
 0.820
ENSSAUP00010026530
Actin related protein 5.
    
 0.805
ENSSAUP00010033278
RuvB-like AAA ATPase 1.
    
 0.802
arid4a
AT-rich interaction domain 4A.
    
 0.800
ENSSAUP00010026940
Translocase of outer mitochondrial membrane 20.
    
 0.800
polr2f
RNA polymerase II subunit F.
   
 0.764
pcna
Proliferating cell nuclear antigen.
   
 0.747
polr1c
RNA polymerase I and III subunit C.
   
 0.726
polr2c
RNA polymerase II subunit C.
   
 0.726
ENSSAUP00010055094
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.719
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.