STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115594814Carbonic anhydrase 4-like. (342 aa)    
Predicted Functional Partners:
ENSSAUP00010007246
Ribosome production factor 2 homolog.
   
 
 0.737
ENSSAUP00010064522
Ribosome biogenesis regulator 1 homolog.
   
 
 0.660
rpl11
Ribosomal protein L11.
    
 
 0.621
RPL5
Ribosomal protein L5.
    
 
 0.617
RPL5-2
60S ribosomal protein L5-like.
    
 
 0.617
LOC115570135
Carbonic anhydrase 1-like.
  
 
0.604
ENSSAUP00010027429
Carbonic anhydrase.
  
 
0.600
grwd1
Glutamate rich WD repeat containing 1.
   
  
 0.584
ENSSAUP00010015675
Carbonic anhydrase XII.
  
  
0.582
ca14
Carbonic anhydrase 14.
  
  
0.578
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.