STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115591172Ras-related protein Rab-6B-like. (324 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.918
ENSSAUP00010013597
GDP dissociation inhibitor 1.
   
 0.900
LOC115595158
Rab GDP dissociation inhibitor beta-like.
   
 0.900
ENSSAUP00010064433
Zgc:112334.
   
 0.900
GCC2
GRIP and coiled-coil domain containing 2.
    
 0.895
galnt16
Polypeptide N-acetylgalactosaminyltransferase 16.
    
 
 0.876
vps53
VPS53 subunit of GARP complex.
    
 0.861
LOC115586973
Uncharacterized LOC115586973.
   
 0.854
ENSSAUP00010062959
ADP-ribosylation factor-like 1.
   
 0.854
cog6
Component of oligomeric golgi complex 6.
   
 0.846
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.