STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010004158LHFPL tetraspan subfamily member 4a. (245 aa)    
Predicted Functional Partners:
ENSSAUP00010037639
Protocadherin-related 15b.
   
 0.707
ENSSAUP00010044675
Protocadherin-related 15a.
   
 0.707
LOC115586096
Cadherin-related family member 5-like.
   
 0.707
TMC1
Transmembrane channel like 1.
   
 
 0.652
tmie
Transmembrane inner ear.
     
 0.577
cib2
Calcium and integrin binding family member 2.
     
 0.547
ENSSAUP00010059164
Calcium and integrin binding 1 (calmyrin).
     
 0.547
ENSSAUP00010067533
Calcium and integrin binding family member 3.
     
 0.547
cdhr2
Cadherin related family member 2.
   
 0.481
ENSSAUP00010050140
Cadherin-related 23.
   
 0.481
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.