STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnajc12DnaJ heat shock protein family (Hsp40) member C12. (174 aa)    
Predicted Functional Partners:
cdc5l
Cell division cycle 5 like.
    
 
 0.722
tmem254
Transmembrane protein 254.
    
  0.579
blvrb
Biliverdin reductase B.
    
  0.579
ndufa9
NADH:ubiquinone oxidoreductase subunit A9.
    
  0.573
htatip2
Oxidoreductase HTATIP2-like.
    
  0.550
ENSSAUP00010047251
annotation not available
      
 0.529
ENSSAUP00010070011
DnaJ (Hsp40) homolog, subfamily C, member 1.
    
 
 0.520
pah
Phenylalanine hydroxylase.
    
 
 0.517
stub1
STIP1 homology and U-box containing protein 1.
    
 
 0.513
polg
DNA polymerase gamma, catalytic subunit.
      
 0.510
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.