STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010004539Transaldolase 1. (339 aa)    
Predicted Functional Partners:
h6pd
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.
  
 0.997
rbm45
RNA binding motif protein 45.
  
 0.993
ENSSAUP00010062717
Transketolase a.
  
 0.992
LOC115585285
Transketolase-like protein 2.
  
 0.989
TKT
Transketolase.
  
 0.989
LOC115586269
Glucose-6-phosphate isomerase-like.
  
 
 0.977
ENSSAUP00010048310
Glucose-6-phosphate isomerase b.
  
 
 0.977
rpe
Ribulose-5-phosphate-3-epimerase.
  
 0.974
LOC115578697
Triosephosphate isomerase.
  
 0.968
ENSSAUP00010059600
Triosephosphate isomerase 1b.
  
 0.968
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.