STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115569077Ubiquitin-like protein 3. (124 aa)    
Predicted Functional Partners:
UBL5
Ubiquitin like 5.
      
 0.561
sumo1
Small ubiquitin like modifier 1.
      
 0.523
atg12
Autophagy related 12.
      
 0.522
clpp
Caseinolytic mitochondrial matrix peptidase proteolytic subunit.
      
 0.518
ufm1
Ubiquitin fold modifier 1.
      
 0.513
atg5
Autophagy related 5.
      
 0.512
atg3
Autophagy related 3.
      
 0.509
atg7
Autophagy related 7.
      
 0.487
ufl1
UFM1 specific ligase 1.
      
 0.481
uba5
Ubiquitin like modifier activating enzyme 5.
      
 0.474
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.