STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clip3CAP-Gly domain containing linker protein 3. (631 aa)    
Predicted Functional Partners:
ENSSAUP00010041663
Mechanistic target of rapamycin kinase.
   
  0.773
LOC115582586
Ubiquitin carboxyl-terminal hydrolase CYLD-like.
    
 
0.718
cyld
CYLD lysine 63 deubiquitinase.
    
  0.718
LOC115591240
Ubiquitin carboxyl-terminal hydrolase CYLD-like.
    
 
0.718
LOC115589532
Ubiquitin carboxyl-terminal hydrolase CYLD-like.
    
 
0.713
ENSSAUP00010039397
Tumor necrosis factor receptor superfamily, member 1a.
    
  0.689
ENSSAUP00010057066
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
  0.689
bub3
BUB3 mitotic checkpoint protein.
    
 0.684
ENSSAUP00010062713
Ribosomal protein S27a.
    
 0.637
xiap
X-linked inhibitor of apoptosis.
   
  0.632
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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