STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spg21SPG21 abhydrolase domain containing, maspardin. (311 aa)    
Predicted Functional Partners:
ENSSAUP00010062961
Tectonin beta-propeller repeat containing 2.
      
 0.608
spg11
SPG11 vesicle trafficking associated, spatacsin.
      
 0.598
ENSSAUP00010032553
ATP synthase mitochondrial F1 complex assembly factor 2.
   
   0.596
cd58
CD58 molecule.
      
 0.537
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
      
 0.533
ap5z1
Adaptor related protein complex 5 subunit zeta 1.
      
 0.505
LOC115573618
Spartin-like.
      
 0.491
ENSSAUP00010042439
Spartin a.
      
 0.480
nipa1
NIPA magnesium transporter 1.
      
 0.474
lyrm4
LYR motif containing 4.
      
 0.468
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.