STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdx1Pancreatic and duodenal homeobox 1. (259 aa)    
Predicted Functional Partners:
LOC115568326
Insulin-like.
   
 
 0.755
SPOP
Speckle type BTB/POZ protein.
    
   0.720
spopl
Speckle type BTB/POZ protein like.
    
   0.720
LOC115574770
Speckle-type POZ protein-like.
    
   0.720
LOC115593605
Insulin-like.
   
 
 0.697
ENSSAUP00010017174
V-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Aa.
    
 0.647
nkx6-2
NK6 homeobox 2.
   
0.629
ENSSAUP00010038221
annotation not available
    
 0.604
LOC115573738
Hepatocyte nuclear factor 3-beta-like.
    
 0.604
LOC115597377
Hepatocyte nuclear factor 3-beta.
    
 0.604
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.