STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
supt6hSPT6 homolog, histone chaperone and transcription elongation factor. (1763 aa)    
Predicted Functional Partners:
ENSSAUP00010031301
annotation not available
   
 0.999
ENSSAUP00010055094
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.998
polr2a
RNA polymerase II subunit A.
   
 0.993
supt5h
SPT5 homolog, DSIF elongation factor subunit.
   
 0.992
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.992
ssrp1
Structure specific recognition protein 1.
   
 0.991
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.982
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
  
 0.982
polr2c
RNA polymerase II subunit C.
    
 0.981
polr2b
RNA polymerase II subunit B.
   
 0.978
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.