STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115575939Coatomer subunit zeta-1-like. (189 aa)    
Predicted Functional Partners:
arcn1
Archain 1.
   
 0.966
copg2
Coatomer protein complex subunit gamma 2.
    
 0.963
copa
Coatomer protein complex subunit alpha.
   
 0.962
cope
Coatomer protein complex subunit epsilon.
   
 0.962
copb1
Coatomer protein complex subunit beta 1.
   
 0.960
COPB2
Coatomer protein complex subunit beta 2.
   
 0.919
LOC115572437
Coatomer subunit beta.
   
 0.919
arfgap3
ADP ribosylation factor GTPase activating protein 3.
    
 0.848
arfgap2
ADP ribosylation factor GTPase activating protein 2.
    
 0.848
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.765
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.