STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115595886Ras-like GTP-binding protein YPT1. (214 aa)    
Predicted Functional Partners:
trappc3
Trafficking protein particle complex 3.
   
 0.961
ENSSAUP00010057218
Trafficking protein particle complex 8.
    
 0.944
trappc1
Trafficking protein particle complex 1.
    
 0.942
trappc4
Trafficking protein particle complex 4.
    
 0.934
uso1
USO1 vesicle transport factor.
   
 0.930
trappc2
Trafficking protein particle complex 2.
    
 0.927
trappc6b
Trafficking protein particle complex 6B.
    
 0.910
trappc5
Trafficking protein particle complex 5.
    
 0.910
LOC115568510
Trafficking protein particle complex subunit 6b-like.
    
 0.910
TRAPPC5
Trafficking protein particle complex subunit 5-like.
    
 0.910
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.