STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asb4Ankyrin repeat and SOCS box containing 4. (464 aa)    
Predicted Functional Partners:
commd1
Copper metabolism domain containing 1.
    
 0.695
LOC115584355
Dynein heavy chain 12, axonemal-like.
  
 
 0.671
commd8
COMM domain containing 8.
   
  0.670
ift81
Intraflagellar transport 81.
    
 0.667
LOC115575745
Tetratricopeptide repeat protein 30A-like.
    
 0.647
cluap1
Clusterin associated protein 1.
    
 0.633
rps3
Ribosomal protein S3.
    
 0.627
LOC115589699
NEDD8-like.
    
  0.627
ift22
Intraflagellar transport 22.
    
 0.627
LOC115572664
NEDD8.
    
  0.627
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.