STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec13SEC13 homolog, nuclear pore and COPII coat complex component. (320 aa)    
Predicted Functional Partners:
nup133
Nucleoporin 133.
    
 0.999
nup98
Nucleoporin 98.
    
 0.999
LOC115567159
Nucleoporin SEH1.
    
0.999
LOC115588252
ranBP2-like and GRIP domain-containing protein 3.
    
 0.999
nup85
Nucleoporin 85.
    
 0.999
nup107
Nucleoporin 107.
   
 0.999
ENSSAUP00010005082
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.998
wdr59
WD repeat domain 59.
    
 0.998
ENSSAUP00010036005
Nucleoporin 37.
    
 0.998
wdr24
WD repeat domain 24.
    
 0.998
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.