STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspnSarcospan. (224 aa)    
Predicted Functional Partners:
sgcg
Sarcoglycan gamma.
   
 
 0.666
sgcd
Sarcoglycan delta.
   
 
 0.582
LOC115570689
Alpha-sarcoglycan-like.
   
  
 0.567
sgcb
Sarcoglycan beta.
      
 0.534
SEMA4D
Semaphorin 4D.
      
 0.525
ENSSAUP00010062599
Subcommissural organ spondin.
      
 0.514
SGCZ
Sarcoglycan zeta.
   
 
 0.508
dag1
Dystroglycan 1.
      
 0.502
LOC115585233
Dystroglycan-like.
      
 0.502
sgce
Sarcoglycan epsilon.
   
  
 0.499
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.