STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115590004CXXC-type zinc finger protein 5-like. (459 aa)    
Predicted Functional Partners:
dvl1
Dishevelled segment polarity protein 1.
    
 0.889
dvl3
Dishevelled segment polarity protein 3.
    
 0.889
tet2
Tet methylcytosine dioxygenase 2.
     
 0.662
ENSSAUP00010060176
Tet methylcytosine dioxygenase 3.
     
0.662
LOC115596529
Methylcytosine dioxygenase TET1-like.
     
0.662
nhsl2
NHS like 2.
  
     0.420
LOC115566770
Uncharacterized LOC115566770.
  
     0.415
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.