STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115568578F-box/LRR-repeat protein 3-like. (430 aa)    
Predicted Functional Partners:
skp1
S-phase kinase associated protein 1.
   
 0.867
cul1
Cullin 1.
    
 0.798
rbx1
Ring-box 1.
    
 0.729
eloc
Elongin C.
    
 0.721
cacul1
CDK2 associated cullin domain 1.
    
 0.715
LOC115571389
Cullin-3.
    
 0.715
CUL3
Cullin-3-like.
    
 0.715
rnf7
Ring finger protein 7.
    
 0.694
ENSSAUP00010015915
COMM domain containing 4.
    
 0.691
LOC115589699
NEDD8-like.
    
 0.668
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.