STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col10a1Collagen type X alpha 1 chain. (660 aa)    
Predicted Functional Partners:
ENSSAUP00010013659
annotation not available
 
    
0.687
ENSSAUP00010034898
annotation not available
 
   
 0.660
satb2
SATB homeobox 2.
      
 0.613
LOC115583286
Complement C1q subcomponent subunit C-like.
  
 
 
0.576
ENSSAUP00010062559
Collagen, type VI, alpha 1.
  
 
0.576
pcolce2
Procollagen C-endopeptidase enhancer 2.
   
 0.548
col6a2
Collagen type VI alpha 2 chain.
  
 
0.545
ENSSAUP00010014625
annotation not available
 
     0.531
ENSSAUP00010011902
annotation not available
  
 
   0.523
COL22A1
Collagen type XXII alpha 1 chain.
  
 
0.520
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.