STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010011349annotation not available (193 aa)    
Predicted Functional Partners:
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.933
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.926
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.923
sf3a3
Splicing factor 3a subunit 3.
   
 0.916
ENSSAUP00010043211
Small nuclear ribonucleoprotein polypeptide F.
   
 0.916
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.915
phf5a
PHD finger protein 5A.
   
 0.914
sf3a1
Splicing factor 3a subunit 1.
   
 0.903
ddx46
DEAD-box helicase 46.
    
 0.899
sf3b1
Splicing factor 3b subunit 1.
   
 0.898
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.