STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010012157annotation not available (390 aa)    
Predicted Functional Partners:
sorl1
Sortilin related receptor 1.
    
 0.639
ENSSAUP00010008760
Nerve growth factor a (beta polypeptide).
    
  0.604
LOC115575081
Uncharacterized LOC115575081.
    
  0.604
ENSSAUP00010047203
Neurotrophin 3.
    
  0.604
PTK7
Protein tyrosine kinase 7 (inactive).
    
  0.593
LOC115583398
Nerve growth factor-like.
     
 0.474
bdnf
Brain derived neurotrophic factor.
     
 0.472
ENSSAUP00010001733
Glyoxalase domain containing 4.
    
  0.457
ENSSAUP00010009612
annotation not available
   
 
 0.456
LOC115572569
High affinity immunoglobulin epsilon receptor subunit gamma-like.
   
 
 0.456
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.