STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115597342Transient receptor potential cation channel subfamily V member 1-like. (758 aa)    
Predicted Functional Partners:
trpm2
Transient receptor potential cation channel subfamily M member 2.
     
 0.896
igf1
Insulin like growth factor 1.
     
 0.794
ENSSAUP00010030922
Transient receptor potential cation channel, subfamily M, member 6.
   
 
 0.717
trpm7
Transient receptor potential cation channel subfamily M member 7.
   
 
 0.675
ENSSAUP00010061610
annotation not available
   
 
 0.675
calm1
Calmodulin 2.
    
 
 0.671
ENSSAUP00010025682
annotation not available
    
 
 0.671
calm1-2
Calmodulin 2.
    
 
 0.671
calm1-3
Calmodulin.
    
 
 0.671
trpm5
Transient receptor potential cation channel subfamily M member 5.
   
 
0.639
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.