rab24 protein (Sparus aurata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rab24

RAB24, member RAS oncogene family. (204 aa)

Predicted Functional Partners:

rabgef1

0.967

ENSSAUP00010018793

0.967

ENSSAUP00010028499

0.967

appl1

0.907

ENSSAUP00010064486

0.907

rbsn

0.895

rabggta

0.863

LOC115588253

0.853

als2

0.853

pik3c3

0.845

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSAUP00010018793	ENSSAUP00010028499	ENSSAUP00010018793	ENSSAUP00010028499	RAB guanine nucleotide exchange factor (GEF) 1, like.	annotation not available	0.686
ENSSAUP00010018793	LOC115588253	ENSSAUP00010018793	ENSSAUP00010040311	RAB guanine nucleotide exchange factor (GEF) 1, like.	Alsin-like.	0.988
ENSSAUP00010018793	als2	ENSSAUP00010018793	ENSSAUP00010058603	RAB guanine nucleotide exchange factor (GEF) 1, like.	Alsin Rho guanine nucleotide exchange factor ALS2.	0.988
ENSSAUP00010018793	pik3c3	ENSSAUP00010018793	ENSSAUP00010012418	RAB guanine nucleotide exchange factor (GEF) 1, like.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.438
ENSSAUP00010018793	rab24	ENSSAUP00010018793	ENSSAUP00010013663	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB24, member RAS oncogene family.	0.967
ENSSAUP00010018793	rabgef1	ENSSAUP00010018793	ENSSAUP00010013567	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB guanine nucleotide exchange factor 1.	0.672
ENSSAUP00010018793	rabggta	ENSSAUP00010018793	ENSSAUP00010006663	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rab geranylgeranyltransferase subunit alpha.	0.406
ENSSAUP00010018793	rbsn	ENSSAUP00010018793	ENSSAUP00010027453	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rabenosyn, RAB effector.	0.574
ENSSAUP00010028499	ENSSAUP00010018793	ENSSAUP00010028499	ENSSAUP00010018793	annotation not available	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.686
ENSSAUP00010028499	LOC115588253	ENSSAUP00010028499	ENSSAUP00010040311	annotation not available	Alsin-like.	0.988
ENSSAUP00010028499	als2	ENSSAUP00010028499	ENSSAUP00010058603	annotation not available	Alsin Rho guanine nucleotide exchange factor ALS2.	0.988
ENSSAUP00010028499	pik3c3	ENSSAUP00010028499	ENSSAUP00010012418	annotation not available	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.438
ENSSAUP00010028499	rab24	ENSSAUP00010028499	ENSSAUP00010013663	annotation not available	RAB24, member RAS oncogene family.	0.967
ENSSAUP00010028499	rabgef1	ENSSAUP00010028499	ENSSAUP00010013567	annotation not available	RAB guanine nucleotide exchange factor 1.	0.682
ENSSAUP00010028499	rbsn	ENSSAUP00010028499	ENSSAUP00010027453	annotation not available	Rabenosyn, RAB effector.	0.574
ENSSAUP00010064486	appl1	ENSSAUP00010064486	ENSSAUP00010047838	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.	0.995
ENSSAUP00010064486	rab24	ENSSAUP00010064486	ENSSAUP00010013663	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	RAB24, member RAS oncogene family.	0.907
ENSSAUP00010064486	rbsn	ENSSAUP00010064486	ENSSAUP00010027453	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	Rabenosyn, RAB effector.	0.605
LOC115588253	ENSSAUP00010018793	ENSSAUP00010040311	ENSSAUP00010018793	Alsin-like.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.988
LOC115588253	ENSSAUP00010028499	ENSSAUP00010040311	ENSSAUP00010028499	Alsin-like.	annotation not available	0.988