STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
npas4Neuronal PAS domain protein 4. (935 aa)    
Predicted Functional Partners:
arnt2
Aryl hydrocarbon receptor nuclear translocator 2.
    
0.926
ENSSAUP00010040856
annotation not available
    
 0.926
LOC115578046
Aryl hydrocarbon receptor nuclear translocator 2-like.
    
 0.926
LOC115586654
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
    
0.863
ARNTL2
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
    
0.863
LOC115586682
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
    
0.863
ENSSAUP00010051179
Aryl hydrocarbon receptor nuclear translocator-like 1b.
    
0.863
CLOCK
Clock circadian regulator.
    
0.822
ENSSAUP00010021013
Nuclear receptor coactivator 1.
    
 0.822
LOC115583329
Nuclear receptor coactivator 3-like.
    
 0.822
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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