STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smdt1Single-pass membrane protein with aspartate rich tail 1. (97 aa)    
Predicted Functional Partners:
micu1
Mitochondrial calcium uptake 1.
    
 0.979
micu2
Mitochondrial calcium uptake 2.
    
 0.970
LOC115590025
Calcium uniporter protein, mitochondrial-like.
    
 0.924
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 0.924
mcu
Mitochondrial calcium uniporter.
    
 0.924
edf1
Endothelial differentiation related factor 1.
   
    0.788
micu3
Mitochondrial calcium uptake family member 3.
     
 0.757
LOC115569062
Calcium uptake protein 3, mitochondrial-like.
     
 0.757
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
     
 0.723
LOC115586301
AFG3-like protein 1.
     
 0.716
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.