STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox2SRY-box transcription factor 2. (322 aa)    
Predicted Functional Partners:
LOC115593295
POU domain, class 5, transcription factor 1-like.
    
 0.926
ctnnb1
Catenin beta 1.
    
 0.762
LOC115571990
Krueppel-like factor 4.
    
 0.690
ENSSAUP00010039313
Doublesex and mab-3 related transcription factor 1.
    
 0.681
sall4
Spalt like transcription factor 4.
   
 0.677
LOC115581840
Nuclear receptor subfamily 5 group A member 2-like.
    
 0.666
nr5a2
Nuclear receptor subfamily 5 group A member 2.
    
 0.666
LOC115586038
Junction plakoglobin-like.
    
 0.650
LOC115576063
Junction plakoglobin-like.
    
 0.650
LOC115575352
Catenin beta-1-like.
    
 0.650
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.