STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115568379Heterogeneous nuclear ribonucleoprotein L-like. (552 aa)    
Predicted Functional Partners:
LOC115592897
Heterogeneous nuclear ribonucleoprotein K-like.
   
 0.792
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.792
ENSSAUP00010013319
annotation not available
   
0.751
PTBP2
Polypyrimidine tract binding protein 2.
   
0.751
LOC115572254
Polypyrimidine tract-binding protein 2-like.
   
0.751
ptbp1
Polypyrimidine tract binding protein 1.
   
0.751
ENSSAUP00010031130
annotation not available
   
 0.748
hnrnpu
Heterogeneous nuclear ribonucleoprotein U.
   
 0.744
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.744
ncbp2
Nuclear cap binding protein subunit 2.
    
  0.732
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.