STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115594043Beta,beta-carotene 9',10'-oxygenase-like. (605 aa)    
Predicted Functional Partners:
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
    
 0.672
ENSSAUP00010020707
Myosin IXAa.
   
 0.659
LOC115586414
Unconventional myosin-IXAa-like.
   
 0.659
LOC115577014
Aldehyde oxidase 1-like.
   
 
 0.659
ENSSAUP00010066248
Myosin IXB.
   
 0.659
LOC115579650
Lecithin retinol acyltransferase-like.
     
 0.654
ENSSAUP00010067721
Myosin IXb.
   
 0.648
pnpla4
Patatin like phospholipase domain containing 4.
     
 0.633
ENSSAUP00010016394
Dehydrogenase/reductase (SDR family) member 4.
     
 0.625
ENSSAUP00010039692
annotation not available
   
 
  0.621
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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