STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010017416Collagen, type XXVIII, alpha 2b. (939 aa)    
Predicted Functional Partners:
ENSSAUP00010067168
annotation not available
   
  0.641
ENSSAUP00010003976
Im:7152348.
   
 0.638
arid4a
AT-rich interaction domain 4A.
    
 0.636
ENSSAUP00010026940
Translocase of outer mitochondrial membrane 20.
    
 0.636
ENSSAUP00010057421
annotation not available
   
 0.620
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.598
mst1r
Macrophage stimulating 1 receptor.
    
  0.598
LOC115583471
Macrophage-stimulating protein receptor-like.
    
  0.598
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.592
wdr90
WD repeat domain 90.
    
  0.578
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.