STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dimt1DIMT1 rRNA methyltransferase and ribosome maturation factor. (306 aa)    
Predicted Functional Partners:
bysl
Bystin like.
   
 
 0.999
tsr1
TSR1 ribosome maturation factor.
   
 
 0.998
eed
Periodic tryptophan protein 2 homolog.
   
 
 0.997
ENSSAUP00010018946
IMP U3 small nucleolar ribonucleoprotein 4.
   
   0.994
ENSSAUP00010065018
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
   0.994
ltv1
LTV1 ribosome biogenesis factor.
   
 
 0.992
rcl1
RNA terminal phosphate cyclase like 1.
  
   0.991
ENSSAUP00010030525
WD repeat domain 36.
   
   0.990
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
  
 
 0.990
noc4l
Nucleolar complex associated 4 homolog.
   
   0.989
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.