STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD50Ankyrin repeat domain 50. (1426 aa)    
Predicted Functional Partners:
PPP6C
Protein phosphatase 6 catalytic subunit.
   
 0.757
LOC115592817
Serine/threonine-protein phosphatase 6 catalytic subunit-like.
   
 0.757
LOC115586862
Serine/threonine-protein phosphatase 6 regulatory subunit 2-like.
    
 0.702
ENSSAUP00010052726
Protein phosphatase 6, regulatory subunit 3.
    
 0.702
LOC115595352
Serine/threonine-protein phosphatase 6 regulatory subunit 2-like.
    
 0.702
rps3
Ribosomal protein S3.
    
 0.678
ift81
Intraflagellar transport 81.
    
 0.667
skp1
S-phase kinase associated protein 1.
    
 0.647
acp5
Acid phosphatase 5, tartrate resistant.
   
 0.633
ift22
Intraflagellar transport 22.
    
 0.627
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.