STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115587511Ras-related protein Rab-33B-like. (232 aa)    
Predicted Functional Partners:
atg16l1
Autophagy related 16 like 1.
    
 0.950
atg16l2
Autophagy related 16 like 2.
    
 0.950
trappc1
Trafficking protein particle complex 1.
    
 0.890
trappc4
Trafficking protein particle complex 4.
    
 0.885
ENSSAUP00010057218
Trafficking protein particle complex 8.
    
 0.878
trappc2
Trafficking protein particle complex 2.
    
 0.867
LOC115593420
Ras-related protein Rab-33B-like.
  
  
 
0.851
rab33b
RAB33B, member RAS oncogene family.
  
  
 
0.848
uso1
USO1 vesicle transport factor.
   
 0.839
lca5
Lebercilin LCA5.
    
 0.829
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.