STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tubTUB bipartite transcription factor. (509 aa)    
Predicted Functional Partners:
ttc21b
Tetratricopeptide repeat domain 21B.
    
 0.845
ift140
Intraflagellar transport 140.
    
 0.841
IFT122
Intraflagellar transport 122.
    
 0.840
wdr19
WD repeat domain 19.
    
 0.836
ENSSAUP00010006693
WD repeat domain 35.
    
 0.814
gpr161
G protein-coupled receptor 161.
     
 0.700
IFT43
Intraflagellar transport 43.
    
 
 0.601
ankrd54
Ankyrin repeat domain 54.
    
   0.567
ift80
Intraflagellar transport 80.
   
 0.511
vim
Vimentin.
      
 0.506
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.