STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115565950Sodium/calcium exchanger 2-like. (973 aa)    
Predicted Functional Partners:
LOC115572941
cAMP-dependent protein kinase catalytic subunit beta.
   
 
  0.845
fras1
Fraser extracellular matrix complex subunit 1.
   
0.841
prkacb
Protein kinase cAMP-activated catalytic subunit beta.
   
 
  0.802
LOC115575879
cAMP-dependent protein kinase catalytic subunit alpha-like.
   
 
  0.802
prkaca
Protein kinase cAMP-activated catalytic subunit alpha.
   
 
  0.764
slc24a4
Solute carrier family 24 member 4.
   
 
0.521
LOC115591901
Sodium/potassium/calcium exchanger 3-like.
   
 
0.521
LOC115596946
Sodium/potassium/calcium exchanger 3-like.
   
 
0.521
slc8b1
Solute carrier family 8 member B1.
     
 0.488
cspg4
Chondroitin sulfate proteoglycan 4.
   
 0.486
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.