STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaaf4Dynein axonemal assembly factor 4. (414 aa)    
Predicted Functional Partners:
ENSSAUP00010055094
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.916
ENSSAUP00010046194
annotation not available
   
 0.894
ENSSAUP00010046198
annotation not available
   
 0.815
nudt12
Nudix hydrolase 12.
   
  0.813
bbs9
Bardet-Biedl syndrome 9.
    
 0.811
ENSSAUP00010033278
RuvB-like AAA ATPase 1.
   
 0.804
ENSSAUP00010009828
Tetratricopeptide repeat domain 8.
   
 0.800
ENSSAUP00010034307
Bardet-Biedl syndrome 7.
    
 0.788
ENSSAUP00010008939
Cell division cycle 16 homolog (S. cerevisiae).
    
 0.774
ENSSAUP00010038547
Anaphase promoting complex subunit 1.
    
 0.771
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.